CPTAC Proteogenomic Benchmarks
Proteogenomic benchmarks across 10 tumor types — drives DREAM proteogenomic challenges.
Composite score: 80.8
Rubric (1–5 per criterion)
rigor
5/5
coverage
3/5
maintenance
4/5
adoption
4/5
quality
5/5
accessibility
3/5
industry_relevance
4/5
Metadata
Stages
Disease ModelingTarget IDPhase II
Modalities
cross-modality
Task types
biomarker-discovery
License
dbGaP / public
First release
2011
Last updated
2025-03
Flags
none
Size & scope
- samples: 1600
- tumor_types: 10
- omics_layers: 6
Primary paper
Title
Proteogenomic Characterization of Cancer Types (CPTAC overview)
Authors
Zhang B, Wang J, Wang X, et al.
Year
2014
DOI / arXiv
Citations
1200
Links
- Official site: https://proteomics.cancer.gov/programs/cptac
- GitHub: https://github.com/PayneLab/cptac
- Leaderboard: N/A
Hosted by (initiatives)
Experts (primary authors / maintainers)
Groups (host labs / companies / consortia)
Related benchmarks
Notes (honest caveats)
Deep integrative oncology data.