Biologics

🧬 Benchmarks for biologics — antibodies, peptides, proteins, ADCs, bispecifics, and related modalities.

42
Benchmarks
88
Avg composite score
14
Wet-lab / prospective validated
9
Pipeline stages covered

Stage distribution

Virtual Cell (1)Disease Modeling (1)Target ID (9)Hit ID (28)Lead ID / ADMET (15)Developmental Candidate (6)IND-enabling (5)Post-market / RWE (1)

Validation distribution

13
1
26
2
Wet-lab confirmed (13)
Prospective (1)
Retrospective (26)
None (2)

All Biologics benchmarks (42)

#BenchmarkStagesValidationScoreFlags
1SAbDabHit IDLead ID / ADMETDevelopmental CandidateRetrospective100.0
2Protein Language Model Eval 2026Virtual CellHit IDWet-lab confirmed100.0
3ChEMBLHit IDLead ID / ADMETWet-lab confirmed97.5
4Observed Antibody Space (OAS)Hit IDLead ID / ADMETRetrospective97.5
5ProteinGymTarget IDLead ID / ADMETIND-enablingWet-lab confirmed97.5
6CAFA 6 (Critical Assessment of Function Annotation 6)Target IDWet-lab confirmed97.5competitionkaggletime_delayed_evaluation
7PoseBustersHit IDRetrospective97.0
8PLINDERHit IDRetrospective97.0
9PLINDER v2 Protein-Ligand BenchmarkHit IDRetrospective97.0
10Therapeutic Antibody Design Benchmark 2026Hit IDLead ID / ADMETWet-lab confirmed97.0
11Protein Design Benchmark 2026Hit IDWet-lab confirmed97.0
12STRINGTarget IDDisease ModelingRetrospective94.9
13CASP15Hit IDTarget IDRetrospective94.9
14CASP16Hit IDRetrospective94.4
15CAMEO weekly targetsHit IDRetrospective94.4
16Boltz-1 Structure Prediction BenchmarkHit IDRetrospective94.4
17FLAb2 (Fitness Landscape for Antibodies 2)IND-enablingLead ID / ADMETWet-lab confirmed91.9biologicsmulti_property
18PoseX (Protein-Ligand Docking Benchmark)Hit IDLead ID / ADMETRetrospective91.4leakage_preventioncross_dockingleaderboard
19FAERS (raw)Post-market / RWERetrospective91.1
20canSARTarget IDHit IDWet-lab confirmed89.4
21PINDERHit IDRetrospective88.9
22CoV-AbDabHit IDRetrospective88.9
23BenchBB (Bench-tested Binder Benchmark)Hit IDLead ID / ADMETWet-lab confirmed88.4experimental_validationcompetitionwet_lab
24ISM Benchmarks: GPCRs (Insilico)Hit IDLead ID / ADMETRetrospective87.6
25CAPRI RoundsHit IDRetrospective86.3
26OpenBind EV-A71 Structure-Affinity DatasetHit IDLead ID / ADMETWet-lab confirmed84.8experimental_validationcrystallography
27CAFA5Target IDRetrospective84.3
28LSD Large-Scale Docking DatabaseHit IDWet-lab confirmed82.5ultra_large_scaleexperimental_validation
29CycPeptMPDB (Cyclic Peptide Membrane Permeability Database)IND-enablingLead ID / ADMETWet-lab confirmed82.5biologicspeptide_therapeuticspermeability
30FLIPTarget IDDevelopmental CandidateRetrospective80.8
31AbBiBench (Antibody Binding Benchmark)Lead ID / ADMETRetrospective80.8biologicsaffinity_maturation
32Open Systems Pharmacology / PK-Simphase-iIND-enablingRetrospective80.3
33pepADMETIND-enablingLead ID / ADMETRetrospective80.0biologicspeptide_therapeuticsfirst_in_class
34Polaris Biologics (Polyreactivity / SEC / Tm)Developmental CandidateProspective79.0
35BioDesignBenchHit IDLead ID / ADMETRetrospective77.7agent_benchmarkprotein_engineering
36IgLM / AntiBERTa benchmarksHit IDDevelopmental CandidateWet-lab confirmed77.5
37CASF-2016Hit IDRetrospective76.2
38PDBbindHit IDLead ID / ADMETRetrospective75.9data-leakage-known
39TAPETarget IDDevelopmental CandidateRetrospective74.9deprecated-recommend-replace
40PEERTarget IDDevelopmental CandidateRetrospective74.4
41PDFBench (De Novo Protein Design from Function)Hit IDNone68.9text_guided_designmulti_metric
42VSDS-vd (Virtual Screening Decoy Set for Docking)Hit IDNone65.8chinese_benchmarkvirtual_screening
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