Stage: Virtual Cell
7 benchmarks, ranked by composite score. ← All stages
| # | Benchmark | Description | Modalities | Score | Flags |
|---|---|---|---|---|---|
| 1 | Open Problems: Perturbation Prediction | NeurIPS competition & continuing benchmark for single-cell perturbation response prediction under distribution shift. | cross-modality | 91.9 | |
| 2 | LINCS L1000 / CMap | 1.3M transcriptional profiles across 978 landmark genes after genetic or chemical perturbations. | small-moleculecross-modality | 89.9 | |
| 3 | scPerturb | Harmonized single-cell perturbation datasets (genetic + chemical) with standardized metadata. | cross-modality | 88.9 | |
| 4 | CZ Virtual Cell Challenge | Open challenge to predict transcriptomic responses to genetic & chemical perturbations across cell types, hosted by CZ Biohub. | cross-modality | 88.1 | |
| 5 | Geneformer Eval | Evaluation of Geneformer (30M transformer pretrained on single-cell corpus) on zero-shot & few-shot downstream tasks. | cross-modality | 77.0 | self_referential |
| 6 | scGPT Evaluation Suite | Evaluation shipped with scGPT foundation model (cell type annotation, GRN, perturbation). | cross-modality | 73.7 | self_referential |
| 7 | PerturbBench | Benchmark for generalization of perturbation foundation models to unseen genetic perturbations / cell contexts. | cross-modality | 71.4 |