scPerturb
Harmonized single-cell perturbation datasets (genetic + chemical) with standardized metadata.
Composite score: 88.9
Rubric (1–5 per criterion)
rigor
5/5
coverage
4/5
maintenance
4/5
adoption
4/5
quality
5/5
accessibility
5/5
industry_relevance
4/5
Metadata
Stages
Virtual CellTarget ID
Modalities
cross-modality
Task types
perturbation-prediction
License
MIT
First release
2023-05
Last updated
2024-11
Flags
none
Size & scope
- cells: 1700000
- datasets: 44
Primary paper
Title
scPerturb: Harmonized single-cell perturbation data
Authors
Peidli S, Green TD, Shen C, Theis FJ, et al.
Year
2024
DOI / arXiv
Citations
280
Links
- Official site: http://projects.sanderlab.org/scperturb/
- GitHub: https://github.com/sanderlab/scPerturb
- Leaderboard: N/A — dataset resource
Hosted by (initiatives)
- not hosted by any tracked initiative
Experts (primary authors / maintainers)
Groups (host labs / companies / consortia)
Related benchmarks
Notes (honest caveats)
Canonical harmonized resource. Strong Perturb-seq coverage; weaker for chemical perturbations.