PerturbBench
Benchmark for generalization of perturbation foundation models to unseen genetic perturbations / cell contexts.
Composite score: 71.4
Rubric (1–5 per criterion)
rigor
4/5
coverage
3/5
maintenance
3/5
adoption
3/5
quality
4/5
accessibility
4/5
industry_relevance
4/5
Metadata
Stages
Virtual Cell
Modalities
cross-modality
Task types
perturbation-prediction
License
Apache-2.0
First release
2024-12
Last updated
2025-06
Flags
none
Size & scope
- cells: 400000
- perturbations: 200
Primary paper
Title
PerturbBench: Benchmarking Single-Cell Perturbation Foundation Models
Authors
Wu Y, Barry T, Wang K, et al.
Year
2024
DOI / arXiv
Citations
35
Links
- Official site: https://github.com/genentech/PerturbBench
- GitHub: https://github.com/genentech/PerturbBench
- Leaderboard: N/A
Hosted by (initiatives)
- not hosted by any tracked initiative
Experts (primary authors / maintainers)
Groups (host labs / companies / consortia)
Related benchmarks
Notes (honest caveats)
Pharma-led (Genentech); well-specified eval.