scImmuneBench

Single-cell immune repertoire benchmark spanning TCR/BCR repertoire embedding and immune cell annotation across 14 studies.

Composite

79.5

Experimental validation

Retrospective

Stages

Virtual CellDisease Modeling

Modalities

cell-therapy

Task types

cell-type-annotationt-cell-receptor-specificity

Size

cells: 4,200,000
tcrs: 1,700,000

License

CC-BY-4.0

First release

2025-06

Last updated

2026-03

Official site

→ project page

Leaderboard

→ leaderboard

Dataset

→ dataset

Code / GitHub

→ repository

HuggingFace

→ HF

Paper

scImmuneBench: Benchmarking single-cell immune foundation models · Zhang Y, et al. · 2025 · paper · doi:10.1038/s41587-025-02001-1 · 54 citations

Flags

none

Experts

—

Groups

—

Hosted by

Open Problems in Single-Cell Analysis

Related benchmarks

Open Problems: Perturbation Prediction, SAbDab

Rubric (7-criterion)

rigor

coverage

maintenance

adoption

quality

accessibility

industry_relevance

Notes

Useful for cell-therapy companies evaluating immune foundation models.

← Back to all benchmarks

Compare:

Open comparison →