RxRx3 Phenomics Benchmark

Recursion's RxRx3 cellular phenomics dataset repurposed as a public benchmark for morphological embedding and MoA prediction.

Composite

94.9

Experimental validation

Wet-lab confirmed

Stages

Hit IDLead ID / ADMET

Modalities

small-molecule

Task types

phenotypic-similaritymoa-prediction

Size

compounds: 17,000
images: 2,200,000
targets: 736

License

CC-BY-NC-SA-4.0

First release

2024-07

Last updated

2026-03

Official site

→ project page

Leaderboard

→ leaderboard

Dataset

→ dataset

Code / GitHub

→ repository

HuggingFace

→ HF

Paper

RxRx3: Phenomics Map of Biology · Recursion Pharmaceuticals · 2024 · paper · doi:10.1101/2024.07.01.601659 · 140 citations

Flags

none

Experts

—

Groups

Recursion Pharmaceuticals, Valence Labs (Recursion)

Hosted by

Polaris Hub

Related benchmarks

Open Problems: Perturbation Prediction, LINCS L1000 / CMap

Rubric (7-criterion)

rigor

coverage

maintenance

adoption

quality

accessibility

industry_relevance

Notes

Real phenomics data from Recursion's lab; public subsets only. Full dataset is proprietary (see private_benchmarks).

← Back to all benchmarks

Compare:

Open comparison →